I use Cad Lite and if I make the tool paths individually instead of using the Make Path method you can change the order of the cuts by clicking on VIEW, then click on SHOW TOOL PATH VIEWER, check the box SHOW ORDER. It will now show the order number at each cut, double click on the cut you want to change the order and a box will appear to change it's cut order. I like to make my tool paths this way on pieces with a lot of cuts instead of the "Make Path" method so I can control the progression of cuts across the piece instead of the random chasing back and forth across the piece cut order made by the "Make Path" tool path order.
Mike